JMOL DOCUMENTATION PDF

Jmol is a free, open source molecule viewer for students, educators, and researchers in For the most up-to-date scripting documentation see the Jmol/ JSmol. Documentation of Jmol’s scripting language can be found here: http://chemapps. This is the official. JSmol is a fully functional implementation of Jmol that does not Various ways to create surfaces and more documentation on surfaces.

Author: Vubar Fenrizragore
Country: Guatemala
Language: English (Spanish)
Genre: Politics
Published (Last): 11 December 2010
Pages: 239
PDF File Size: 18.72 Mb
ePub File Size: 15.66 Mb
ISBN: 773-2-67747-998-7
Downloads: 89879
Price: Free* [*Free Regsitration Required]
Uploader: Grosida

Multi-language Translated into multiple languages: Using buttons to call javascript methods, each of which is driving a jmol animate script.

All classes and data files are included in this file. One good reference source is http: How to configure a wiki so that it uses the Jmol applet. See JSmol for more details.

Here the community of users can discuss everything that has to do with Jmol and JSmol. Note that files which are compressed using gzip will automatically be decompressed. In addition, the Jmol rendering engine does not currently handle intersecting spheres. Applet was not compiled with a classic compiler. That is, objects further away are smaller. Running Jmol using Java Web Start.

How to install the application on a web server to be delivered using Java Web Start. This example uses onLoad dovumentation execute JavaScript which, in turn, drives the applet.

If you prefer, a list of articles that describe Jmol can be found in the Jmol Literature jol. Backward compatibility changes of behavior across versions Features added since version jmkl Users mailing list and a mirror.

A short script included as an applet parameter which is executed as soon as the applet is loaded.

  ARQUITECTO ABRAHAM ZABLUDOVSKY PDF

Jmol Wiki – Main Page

Internet Explorer does not support LiveConnect. The RasMol commands which are currently not implemented in Jmol are generally those associated with protein visualization: JavaScript method references in this documentation will use this notation.

More dynamical and frequently updated than this web site! In general, the first of these documsntation is only acceptable for short scripts.

Jmol Documentation

Below are given the testing results. The applet is tested and working with Internet Explorer, Netscape, Opera, Mozilla and documenattion and Konqueror on various platforms. Particularly, if you are learning how to use JmolApplet and scripting, you are encouraged to only use the JavaScript library.

The different projection modes are easily visible with crystaline structures or when the enclosing boundbox is turned on, as in:. There you can share ideas and experiences, ask for help, give us feedback, request documentatioon features or changes, discuss implementation, submit patches, or contribute code.

Jmol implements most of the scripting language found in the RasMol molecular visualization tool. Displaying shapes, polyhedra, orbitals, dipoles, distances, forces and vibrations. Shaded images are calculated and cached, so performance should not be an issue except when dealing with very large protein molecules. For up-to-date details or instructions for adding your language, see the Wiki. By default, atoms are rendered with perspective depth. The recommended way to cite Jmol is: How to cite Jmol The recommended way to cite Jmol is: These are official guides for Jmol.

Check out the Screenshot Gallery still images to see samples of what can be done with Jmol and the Demonstration pages especially kmol. Here is its description and documentation.

  AGYKONTROLL SILVA PDF

To embed the Jmol Applet in a web page, you need only one java documnetation file, JmolApplet. For jjmol detailed documentation on RasMol scripting see http: With the exception of a few wrapper classes, the Jmol Applet code is shared with the Jmol Application. Translating Jmol Jmol can be translated into your laguage. They cover the basic functionality of both application and applet, but they have not been updated recently particularly, for features in version 11 of Jmol.

Jmol Wiki – Scripting

You are welcome to browse around and to add new pages, extra information, comments, questions, documentqtion to useful examples of Jmol use or Jmol scripting, or whatever else you think is relevant.

All of the following examples load the molecule caffeine.

The underlying technology that supports this is known as LiveConnect. To get things to run on an installed base of older Netscape and IE browsers you may want to consider looking for ‘old’ documentation rather than ‘up documenation date’ documentation. Please, read instructions in this Wiki page and, if you need help, contact the developers team.

documentaation This should not be needed except on very large molecules or very old computers. Get the files from SourceForge.

Jmol community Jmol Wiki A user-maintained site collecting a lot of information about the use of Jmol. This interactive online documentation is the reference guide for all commands that form the Jmol scripting language.